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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8997879_8998345_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8997879 - 8998345
Intron Length:
467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
CCCTCCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTAAT
U12 Branch Point Sequence:
GTGTCCCTAATA
Flanking Amino Acid:
APEIVTGSRDGTVKVWDPRQ
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
72.8
34.5
Major BPS
69.6
0.49
1.1
69.5
34
Major PPT
81.3
0.7
0.7
74.9
27.2
Minor 5ss
34.2
-1.8
2.8
37
41.8
Minor BPS
65
0.47
1.7
72.98
39

Associated Gene:

Gene:
WDR92
Ensembl Gene ID:
ENSAPLG00000029023
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043535
8995888 - 9002745
6858