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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_9001779_9002537_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9001779 - 9002537
Intron Length:
759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTGAT
5'SS Class:
major
3'SS Sequence:
TTCTTATTGCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTTTTCTTATTG
Flanking Amino Acid:
GGAGSLHLWKYEYPAQRSKK
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
76.9
31.6
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
78.7
0.65
1
73.4
41
Minor 5ss
36.2
-1.6
3.3
50.7
41.2
Minor BPS
61.9
0.24
1.7
66.23
42.5

Associated Gene:

Gene:
WDR92
Ensembl Gene ID:
ENSAPLG00000029023
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043535
8995888 - 9002745
6858