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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_9020811_9022161_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9020811 - 9022161
Intron Length:
1351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCATTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATT
Flanking Amino Acid:
SVPRSELLYKLEPLEQAKLD
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
80.3
34.3
Major BPS
100
1.24
0.5
100
0
Major PPT
85.6
0.8
0.7
78.8
34.4
Minor 5ss
35.2
-1.7
3.1
49.5
46.7
Minor BPS
67.5
0.63
1.7
86.64
33.8

Associated Gene:

Gene:
C1D
Ensembl Gene ID:
ENSAPLG00000009320
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009711
9020664 - 9025534
4871