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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_90315655_90323439_F

Intron Information:

Intron Rank:
128229
Intron Class:
major
Intron Phase:
Intron Coordinates:
90315655 - 90323439
Intron Length:
7785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTACCCTGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TATTTTTTACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
79.4
28.9
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
73.9
0.54
1
69.3
36.8
Minor 5ss
38.1
-1.3
3.1
48.5
47.7
Minor BPS
65.9
0.48
1.6
74.61
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019056
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019363
90313642 - 90325074
11433