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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_90420397_90426969_R

Intron Information:

Intron Rank:
153489
Intron Class:
major
Intron Phase:
Intron Coordinates:
90420397 - 90426969
Intron Length:
6573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
GTAATCTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAC
U12 Branch Point Sequence:
GCTTTCCTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
76.3
34
Major BPS
69.5
0.49
1
71.8
33.3
Major PPT
76.3
0.59
1
68.9
41.6
Minor 5ss
47
-0.3
2.8
67.3
37.5
Minor BPS
66.4
0.59
1.7
81.08
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030054
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018636
90419861 - 90428392
8532