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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_9048060_9056279_F

Intron Information:

Intron Rank:
134853
Intron Class:
major
Intron Phase:
Intron Coordinates:
9048060 - 9056279
Intron Length:
8220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGTGCG
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTAACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ACTTCCTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
67.5
37.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
68.3
0.41
0.9
63.2
37.3
Minor 5ss
33.6
-1.9
3
40.8
45.6
Minor BPS
89.2
1.31
0.9
94.5
32.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022540
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025062
9047759 - 9056330
8572