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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_9048060_9063855_F

Intron Information:

Intron Rank:
134852
Intron Class:
major
Intron Phase:
Intron Coordinates:
9048060 - 9063855
Intron Length:
15796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTGTGTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
AAAACCCAAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
67.5
37.7
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
76.4
0.6
1
71.1
38.6
Minor 5ss
33.6
-1.9
3
40.8
45.6
Minor BPS
43.4
-0.6
2
45.7
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022540
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024161
9047759 - 9065741
17983