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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_9069498_9149589_F

Intron Information:

Intron Rank:
143741
Intron Class:
major
Intron Phase:
Intron Coordinates:
9069498 - 9149589
Intron Length:
80092

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
TATTATGATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TGTGTTTTATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
72.5
0.51
1.1
66.5
43.7
Minor 5ss
38.8
-1.3
2.8
48.8
47
Minor BPS
51.4
0.04
1.6
62.73
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027445
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041156
9069061 - 9149927
80867