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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_90892592_91083855_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
90892592 - 91083855
Intron Length:
191264

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGCT
5'SS Class:
strong_major
3'SS Sequence:
ATTCTGTCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CTTTCATAAACC
Flanking Amino Acid:
TREAKRPPKEEFGMMGDHTI
Intron Amino Acid Position:
252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.9
33.5
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
76.8
0.6
0.8
74.3
35.9
Minor 5ss
33.9
-1.8
3.5
49.9
46.5
Minor BPS
61.3
0.33
2
75.46
41.2

Associated Gene:

Gene:
ADGRB3
Ensembl Gene ID:
ENSAPLG00000016368
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017089
90891823 - 91363402
471580
ENSAPLT00000028981
90889234 - 91363402
474169
ENSAPLT00000021656
90889234 - 91363402
474169