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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_91100912_91101817_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
91100912 - 91101817
Intron Length:
906

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTTTTCCCAATA
Flanking Amino Acid:
SRECYNPECTANGQWNQWGH
Intron Amino Acid Position:
453

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
87
27.7
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
78.1
0.63
0.8
75.2
28.7
Minor 5ss
40.4
-1.1
2.8
51.7
39.2
Minor BPS
58.5
0.26
1.8
76.03
35.2

Associated Gene:

Gene:
ADGRB3
Ensembl Gene ID:
ENSAPLG00000016368
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021656
90889234 - 91363402
474169
ENSAPLT00000017089
90891823 - 91363402
471580
ENSAPLT00000035142
90889234 - 91363402
474169
ENSAPLT00000028981
90889234 - 91363402
474169