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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_91181093_91266737_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
91181093 - 91266737
Intron Length:
85645

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTGAC
5'SS Class:
major
3'SS Sequence:
CTCTCCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTTTTCCCC
Flanking Amino Acid:
PYCVLWDDSRTNDSLGTWST
Intron Amino Acid Position:
825

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1.3
75.8
34.3
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
85.3
0.79
0.7
79.9
25.4
Minor 5ss
34.4
-1.8
3.2
42.7
38
Minor BPS
44.1
-0.4
3.6
72.92
38.9

Associated Gene:

Gene:
ADGRB3
Ensembl Gene ID:
ENSAPLG00000016368
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028981
90889234 - 91363402
474169
ENSAPLT00000021656
90889234 - 91363402
474169
ENSAPLT00000017089
90891823 - 91363402
471580
ENSAPLT00000035142
90889234 - 91363402
474169