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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_91271592_91320586_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
91271592 - 91320586
Intron Length:
48995

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGATAG
5'SS Class:
strong_major
3'SS Sequence:
TTGCTCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAG
U12 Branch Point Sequence:
TATTCAGCACAA
Flanking Amino Acid:
LVGQTQTHNKGICTTTTAFL
Intron Amino Acid Position:
937

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
70.3
36.4
Major BPS
68.2
0.45
1.5
77.7
37.1
Major PPT
80
0.67
0.8
74
31.1
Minor 5ss
43.4
-0.7
2.8
55.2
49
Minor BPS
38.2
-0.8
2.4
55.53
42.8

Associated Gene:

Gene:
ADGRB3
Ensembl Gene ID:
ENSAPLG00000016368
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028981
90889234 - 91363402
474169
ENSAPLT00000021656
90889234 - 91363402
474169
ENSAPLT00000017089
90891823 - 91363402
471580
ENSAPLT00000035142
90889234 - 91363402
474169