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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_91328503_91331861_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
91328503 - 91331861
Intron Length:
3359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGCAGA
5'SS Class:
major
3'SS Sequence:
TGTTTGTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTCAAT
U12 Branch Point Sequence:
TGTTCTTTTTGT
Flanking Amino Acid:
ILDKKLKHRAGQMSEPHSGL
Intron Amino Acid Position:
1061

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
68.9
43.8
Major BPS
68.1
0.45
1.3
76.8
34.3
Major PPT
86
0.81
0.8
80.6
37
Minor 5ss
38.3
-1.3
2.8
40.4
45.5
Minor BPS
40.2
-0.6
3.7
72.27
44.8

Associated Gene:

Gene:
ADGRB3
Ensembl Gene ID:
ENSAPLG00000016368
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035142
90889234 - 91363402
474169
ENSAPLT00000021656
90889234 - 91363402
474169
ENSAPLT00000017089
90891823 - 91363402
471580