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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_91328503_91332312_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
91328503 - 91332312
Intron Length:
3810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGCAGA
5'SS Class:
major
3'SS Sequence:
TTTCTTTCAATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TTTTCTTTCAAT
Flanking Amino Acid:
ILDKKLKHRAGASLWSSCVV
Intron Amino Acid Position:
1061

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
68.9
43.8
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
80
0.68
0.8
77.9
29.4
Minor 5ss
38.3
-1.3
2.8
40.4
45.5
Minor BPS
68.2
0.65
1.8
88.96
35.8

Associated Gene:

Gene:
ADGRB3
Ensembl Gene ID:
ENSAPLG00000016368
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028981
90889234 - 91363402
474169