About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_91331961_91332312_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
91331961 - 91332312
Intron Length:
352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTTAGTCCT
5'SS Class:
major
3'SS Sequence:
TTTCTTTCAATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TTTTCTTTCAAT
Flanking Amino Acid:
ALSATTASNAMASLWSSCVV
Intron Amino Acid Position:
1094

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.2
69.5
40.8
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
80
0.68
0.8
77.9
29.4
Minor 5ss
35.6
-1.6
2.9
49.4
39.2
Minor BPS
68.2
0.65
1.8
88.96
35.8

Associated Gene:

Gene:
ADGRB3
Ensembl Gene ID:
ENSAPLG00000016368
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035142
90889234 - 91363402
474169
ENSAPLT00000021656
90889234 - 91363402
474169
ENSAPLT00000017089
90891823 - 91363402
471580