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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_91354311_91361125_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
91354311 - 91361125
Intron Length:
6815

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTGGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGCAAT
U12 Branch Point Sequence:
TTTTTTTTGGCA
Flanking Amino Acid:
KSRYSDLDFEKVMHTRKRHM
Intron Amino Acid Position:
1424

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
85.1
25.6
Major BPS
48.1
-0.1
1.3
54.5
39.1
Major PPT
89.2
0.88
0.8
88.3
28.9
Minor 5ss
46.5
-0.4
2.7
61.9
36.7
Minor BPS
47.6
-0.1
3.4
77.15
33.9

Associated Gene:

Gene:
ADGRB3
Ensembl Gene ID:
ENSAPLG00000016368
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035142
90889234 - 91363402
474169
ENSAPLT00000028981
90889234 - 91363402
474169
ENSAPLT00000021656
90889234 - 91363402
474169