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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_91361231_91363118_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
91361231 - 91363118
Intron Length:
1888

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCATCCTCATTT
Flanking Amino Acid:
FRDVPKSGSMENSAQNKAPW
Intron Amino Acid Position:
1447

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
89.6
24.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.1
0.68
0.8
76.8
32
Minor 5ss
46.3
-0.4
2.8
64.1
41.5
Minor BPS
56
0.27
1.8
72.99
44.1

Associated Gene:

Gene:
ADGRB3
Ensembl Gene ID:
ENSAPLG00000016368
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017089
90891823 - 91363402
471580
ENSAPLT00000035142
90889234 - 91363402
474169
ENSAPLT00000028981
90889234 - 91363402
474169
ENSAPLT00000021656
90889234 - 91363402
474169