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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_91402890_91404807_R

Intron Information:

Intron Rank:
132951
Intron Class:
major
Intron Phase:
Intron Coordinates:
91402890 - 91404807
Intron Length:
1918

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCTCTG
5'SS Class:
major
3'SS Sequence:
GTTTCCATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
GTATCCTAGAGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1.2
65.3
46
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
81.8
0.72
0.8
78.4
34.7
Minor 5ss
49.5
-0
2.5
67.2
43.9
Minor BPS
49.9
-0
2
63.79
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018759
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033252
91401118 - 91405220
4103