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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_91468248_91469199_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
91468248 - 91469199
Intron Length:
952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
ATTTACAATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTTTGCATATTT
Flanking Amino Acid:
MYGSQKYLVQSNKTTDGQPG
Intron Amino Acid Position:
444

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
71.2
0.48
1
64.4
40.8
Minor 5ss
29.7
-2.3
3
40.4
45.3
Minor BPS
50.9
0.11
2.2
80.67
41.5

Associated Gene:

Gene:
LMBRD1
Ensembl Gene ID:
ENSAPLG00000016044
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016770
91452587 - 91526046
73460