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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_91469350_91470590_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
91469350 - 91470590
Intron Length:
1241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAATACC
5'SS Class:
major
3'SS Sequence:
TTTTCTGTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
CAGTTGTTAATA
Flanking Amino Acid:
NMGIWFFWIRLYKIRRGKTR
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
72.1
37.7
Major BPS
84.4
0.85
1
84
34.5
Major PPT
85.8
0.8
0.7
85.1
29.7
Minor 5ss
35.9
-1.6
2.7
38.5
39.5
Minor BPS
49.8
-0
2.1
59.24
41.4

Associated Gene:

Gene:
LMBRD1
Ensembl Gene ID:
ENSAPLG00000016044
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016770
91452587 - 91526046
73460