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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_91470696_91471883_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
91470696 - 91471883
Intron Length:
1188

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
CTTCTTGTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
GTCATTTGAATT
Flanking Amino Acid:
LNMLLPVLQTVFPLDYILIT
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
77.3
32.8
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
79.9
0.67
0.8
72.8
37.5
Minor 5ss
37.2
-1.4
2.8
47.9
41.8
Minor BPS
51.6
0.13
1.4
65.52
39.6

Associated Gene:

Gene:
LMBRD1
Ensembl Gene ID:
ENSAPLG00000016044
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016770
91452587 - 91526046
73460