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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_91499132_91501240_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
91499132 - 91501240
Intron Length:
2109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTAAGTTTA
5'SS Class:
major
3'SS Sequence:
CTCATTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GGAAACTTAAAT
Flanking Amino Acid:
KLLFEEFGSSHGLTALSFSI
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.3
75.4
37.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
85.7
0.8
0.8
83.7
31.2
Minor 5ss
45.6
-0.5
2.8
62.8
42
Minor BPS
52.4
0.15
1.7
66.53
42.6

Associated Gene:

Gene:
LMBRD1
Ensembl Gene ID:
ENSAPLG00000016044
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016770
91452587 - 91526046
73460