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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_91501330_91506527_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
91501330 - 91506527
Intron Length:
5198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTAAC
U12 Branch Point Sequence:
TGTTTTGTTACA
Flanking Amino Acid:
LTICAVLLLIGAFVPLDIPN
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.9
90.9
28.7
Major BPS
54.3
0.11
1.2
57.5
37.5
Major PPT
85.4
0.8
0.9
79.9
37.7
Minor 5ss
41.2
-1
2.9
52.2
44.4
Minor BPS
48
-0.1
2.2
66.95
39.5

Associated Gene:

Gene:
LMBRD1
Ensembl Gene ID:
ENSAPLG00000016044
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016770
91452587 - 91526046
73460