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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_91507395_91517150_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
91507395 - 91517150
Intron Length:
9756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTTTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTCACTTAATT
Flanking Amino Acid:
IEDTVLYGYYTLYSIILFCV
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
86.4
28.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
79.4
0.66
0.8
73.2
36.6
Minor 5ss
43.5
-0.7
2.9
62.1
37.1
Minor BPS
76.5
0.91
1.4
90.84
32.1

Associated Gene:

Gene:
LMBRD1
Ensembl Gene ID:
ENSAPLG00000016044
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016770
91452587 - 91526046
73460