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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_91517212_91525255_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
91517212 - 91525255
Intron Length:
8044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTACT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTGTTTTACT
Flanking Amino Acid:
YMKNQNGTFKDWADANVSRQ
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
86.2
29.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
75.5
0.57
0.9
70.3
40.1
Minor 5ss
44.5
-0.6
2.5
60.9
43.5
Minor BPS
57
0.3
2.1
79.47
43

Associated Gene:

Gene:
LMBRD1
Ensembl Gene ID:
ENSAPLG00000016044
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016770
91452587 - 91526046
73460