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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_91525433_91525986_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
91525433 - 91525986
Intron Length:
554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
CCCTGTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTCATTGTAATT
Flanking Amino Acid:
GWCLFGLALLAILIFCWVYV
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
67.9
37.5
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
80.9
0.7
0.8
74.5
33.8
Minor 5ss
29.9
-2.3
3.3
35.5
43.1
Minor BPS
49.8
0.06
2
71.2
40.9

Associated Gene:

Gene:
LMBRD1
Ensembl Gene ID:
ENSAPLG00000016044
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016770
91452587 - 91526046
73460