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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_91762140_91763274_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
91762140 - 91763274
Intron Length:
1135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATATA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTGAT
U12 Branch Point Sequence:
GAGACCTGATTC
Flanking Amino Acid:
KGFPGPRGLPGEPGKASYGR
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
89.5
23.2
Major BPS
70
0.5
1
59.3
39.1
Major PPT
87.1
0.83
0.7
79.7
32.2
Minor 5ss
38.7
-1.3
2.9
50.9
45.5
Minor BPS
45.9
-0.3
1.7
50.29
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021718
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031929
91761955 - 91767865
5911