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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_91839802_91840357_F

Intron Information:

Intron Rank:
146045
Intron Class:
major
Intron Phase:
Intron Coordinates:
91839802 - 91840357
Intron Length:
556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGGATT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TCATCAGTTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
87.7
28
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
88.2
0.86
0.7
83.7
24.4
Minor 5ss
32.8
-2
3.3
47.8
47.9
Minor BPS
45.9
-0.2
2.5
69.99
46.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028700
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047405
91839749 - 91857008
17260
ENSAPLT00000044361
91839749 - 91857869
18121