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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_91840420_91856827_F

Intron Information:

Intron Rank:
146046
Intron Class:
major
Intron Phase:
Intron Coordinates:
91840420 - 91856827
Intron Length:
16408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATTGA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTTTTTTTTAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
70
36.8
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
88.4
0.86
0.9
94.6
18.5
Minor 5ss
45
-0.5
2.6
58.5
46
Minor BPS
56.3
0.05
1.8
67.7
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028700
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047405
91839749 - 91857008
17260
ENSAPLT00000044361
91839749 - 91857869
18121