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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_91860440_91863563_F

Intron Information:

Intron Rank:
126977
Intron Class:
major
Intron Phase:
Intron Coordinates:
91860440 - 91863563
Intron Length:
3124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGAGAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
TCTTCTTTACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
73
31.2
Major BPS
74.2
0.6
1
67
39.4
Major PPT
88.3
0.86
0.7
83
25.5
Minor 5ss
35.8
-1.6
3.3
46.4
48.9
Minor BPS
57.4
0.09
1.8
63.96
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018419
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021651
91860115 - 91865088
4974