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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_91863624_91864239_F

Intron Information:

Intron Rank:
126978
Intron Class:
major
Intron Phase:
Intron Coordinates:
91863624 - 91864239
Intron Length:
616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TCACATCTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
TCCTCCTCACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
79.7
35.3
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
71.3
0.48
0.9
64.5
36
Minor 5ss
36
-1.6
3
47.1
42.6
Minor BPS
49.7
0.05
2
69.15
47.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018419
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021651
91860115 - 91865088
4974