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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_91907049_91924710_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
91907049 - 91924710
Intron Length:
17662

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGTAGT
5'SS Class:
major
3'SS Sequence:
TCTTTTCCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAC
U12 Branch Point Sequence:
TTGCAAATCACT
Flanking Amino Acid:
KFFNVDLFQRGFYQIRASMK
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
72.7
44.5
Major BPS
61.7
0.29
1
63.7
32.3
Major PPT
86.3
0.82
0.6
85.6
21.7
Minor 5ss
35.6
-1.6
3.1
42.2
44.7
Minor BPS
41.3
-0.6
2.3
64.97
44.6

Associated Gene:

Gene:
FAM135A
Ensembl Gene ID:
ENSAPLG00000012238
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044443
91906928 - 91970064
63137
ENSAPLT00000036726
91906928 - 91972493
65566
ENSAPLT00000026571
91903218 - 91968806
65589
ENSAPLT00000012760
91906928 - 91968806
61879