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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_91929281_91929928_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
91929281 - 91929928
Intron Length:
648

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCTCT
5'SS Class:
strong_major
3'SS Sequence:
GTGCTTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TCTTGCTTACCG
Flanking Amino Acid:
SLVALHQPLISFPRPVKNTW
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
74.3
37
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
82
0.72
0.9
76.5
37.5
Minor 5ss
46.6
-0.4
2.8
66.3
44.7
Minor BPS
56.2
0.06
2.1
66.67
47.1

Associated Gene:

Gene:
FAM135A
Ensembl Gene ID:
ENSAPLG00000012238
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036726
91906928 - 91972493
65566
ENSAPLT00000026571
91903218 - 91968806
65589
ENSAPLT00000012760
91906928 - 91968806
61879
ENSAPLT00000044443
91906928 - 91970064
63137