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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_91930056_91930458_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
91930056 - 91930458
Intron Length:
403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTAAAT
U12 Branch Point Sequence:
TGTGCCTAAATC
Flanking Amino Acid:
NNYTKQLSADGCSFVVSESF
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
79
29.3
Major BPS
57.4
0.18
1.1
64.9
37.3
Major PPT
85.5
0.8
0.6
80.4
31.6
Minor 5ss
35.2
-1.7
3
45.1
42.9
Minor BPS
61
0.32
1.8
70.68
41.2

Associated Gene:

Gene:
FAM135A
Ensembl Gene ID:
ENSAPLG00000012238
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036726
91906928 - 91972493
65566
ENSAPLT00000026571
91903218 - 91968806
65589
ENSAPLT00000012760
91906928 - 91968806
61879
ENSAPLT00000044443
91906928 - 91970064
63137