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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_91930613_91934460_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
91930613 - 91934460
Intron Length:
3848

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTTGA
5'SS Class:
strong_major
3'SS Sequence:
CTCATCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTCTCATAGTT
Flanking Amino Acid:
ELPSSHRIELENIDVEVRLT
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
76.7
34.9
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
81.2
0.7
0.8
72.5
37.5
Minor 5ss
45.7
-0.5
2.5
58.5
46
Minor BPS
53.9
0.2
1.8
78.17
38.2

Associated Gene:

Gene:
FAM135A
Ensembl Gene ID:
ENSAPLG00000012238
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012760
91906928 - 91968806
61879