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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_91932292_91934460_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
91932292 - 91934460
Intron Length:
2169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CTCATCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTCTCATAGTT
Flanking Amino Acid:
FPRTQRDAYLENIDVEVRLT
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
80.5
35
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
81.2
0.7
0.8
72.5
37.5
Minor 5ss
49.9
-0
2.4
66.4
45.1
Minor BPS
53.9
0.2
1.8
78.17
38.2

Associated Gene:

Gene:
FAM135A
Ensembl Gene ID:
ENSAPLG00000012238
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044443
91906928 - 91970064
63137
ENSAPLT00000036726
91906928 - 91972493
65566
ENSAPLT00000026571
91903218 - 91968806
65589