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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_91943022_91943338_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
91943022 - 91943338
Intron Length:
317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
TCATTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TATTTTTTCATG
Flanking Amino Acid:
RQAALAYQELHAQSHLQMCA
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1
66.3
39.5
Major BPS
100
1.24
0.5
100
0
Major PPT
89.3
0.88
0.7
88.1
28.9
Minor 5ss
32.8
-2
2.7
42.4
38.3
Minor BPS
55
0.01
1.8
63.33
39.5

Associated Gene:

Gene:
FAM135A
Ensembl Gene ID:
ENSAPLG00000012238
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036726
91906928 - 91972493
65566
ENSAPLT00000026571
91903218 - 91968806
65589
ENSAPLT00000012760
91906928 - 91968806
61879
ENSAPLT00000044443
91906928 - 91970064
63137