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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_91946043_91947992_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
91946043 - 91947992
Intron Length:
1950

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGTGAC
5'SS Class:
major
3'SS Sequence:
TGTTTCATTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTTATCATAAAT
Flanking Amino Acid:
YESSPKPQMLAFLQAKEELK
Intron Amino Acid Position:
1188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.3
66.7
39.6
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
83.1
0.75
0.9
74.5
40
Minor 5ss
33.9
-1.8
3.2
39
39.9
Minor BPS
61.3
0.43
1.7
83.05
37.3

Associated Gene:

Gene:
FAM135A
Ensembl Gene ID:
ENSAPLG00000012238
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036726
91906928 - 91972493
65566
ENSAPLT00000026571
91903218 - 91968806
65589
ENSAPLT00000012760
91906928 - 91968806
61879
ENSAPLT00000044443
91906928 - 91970064
63137