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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_91948154_91950097_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
91948154 - 91950097
Intron Length:
1944

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGCTGG
5'SS Class:
major
3'SS Sequence:
TTTTCCTCTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTTCCTCTAAAG
Flanking Amino Acid:
HLIVCVHGLDGNSADLRLVK
Intron Amino Acid Position:
1242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
55
44.6
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
78.3
0.64
1
79.3
26.9
Minor 5ss
49.5
-0
2.5
61.3
45.5
Minor BPS
55.2
0.02
1.8
67.15
40

Associated Gene:

Gene:
FAM135A
Ensembl Gene ID:
ENSAPLG00000012238
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026571
91903218 - 91968806
65589
ENSAPLT00000012760
91906928 - 91968806
61879
ENSAPLT00000044443
91906928 - 91970064
63137
ENSAPLT00000036726
91906928 - 91972493
65566