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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_91952305_91958029_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
91952305 - 91958029
Intron Length:
5725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATATCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTAAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTCTTTTTAAAC
Flanking Amino Acid:
QIYNLTLSKISFIGHSLGNL
Intron Amino Acid Position:
1305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
77
32.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
79.7
0.67
0.9
77.5
34.7
Minor 5ss
40.6
-1
3.1
57.9
46.2
Minor BPS
69.5
0.59
1.3
74.65
36.2

Associated Gene:

Gene:
FAM135A
Ensembl Gene ID:
ENSAPLG00000012238
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044443
91906928 - 91970064
63137
ENSAPLT00000036726
91906928 - 91972493
65566
ENSAPLT00000026571
91903218 - 91968806
65589
ENSAPLT00000012760
91906928 - 91968806
61879