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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_91967395_91968600_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
91967395 - 91968600
Intron Length:
1206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTCAT
U12 Branch Point Sequence:
GATTCATGCAGT
Flanking Amino Acid:
CKTALKDKQSGPIYAEMIQN
Intron Amino Acid Position:
1431

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
82.6
29.4
Major BPS
74.4
0.61
1.2
77.7
37.1
Major PPT
90
0.9
0.6
85.3
22
Minor 5ss
35.2
-1.7
3
49.1
46.7
Minor BPS
43
-0.4
2.3
64.34
45.1

Associated Gene:

Gene:
FAM135A
Ensembl Gene ID:
ENSAPLG00000012238
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044443
91906928 - 91970064
63137
ENSAPLT00000036726
91906928 - 91972493
65566
ENSAPLT00000026571
91903218 - 91968806
65589
ENSAPLT00000012760
91906928 - 91968806
61879