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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_91999550_92016911_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
91999550 - 92016911
Intron Length:
17362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTACGGTGG
5'SS Class:
major
3'SS Sequence:
CTATTTCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
ATTTCCCTATTT
Flanking Amino Acid:
NKYCADCEAKGPRWASWNTG
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.4
0.43
1.2
52.4
46.9
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
79.6
0.67
0.8
78.1
30.5
Minor 5ss
34.6
-1.7
3.4
37.8
47
Minor BPS
61.4
0.44
1.9
83.26
37.8

Associated Gene:

Gene:
SMAP1
Ensembl Gene ID:
ENSAPLG00000012058
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047327
91999432 - 92084473
85042
ENSAPLT00000039629
91999432 - 92084473
85042
ENSAPLT00000034391
91999432 - 92084473
85042
ENSAPLT00000012560
91999432 - 92084686
85255