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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_92017046_92017744_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
92017046 - 92017744
Intron Length:
699

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATAT
5'SS Class:
strong_major
3'SS Sequence:
CACTTTTCCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TTTTCTATCACT
Flanking Amino Acid:
LDQWTPEQIQCMQEMGNTKA
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.1
28.2
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
74.2
0.55
0.8
73.1
31.4
Minor 5ss
39
-1.2
3.2
55.7
48.5
Minor BPS
63.6
0.51
2
88.67
36.3

Associated Gene:

Gene:
SMAP1
Ensembl Gene ID:
ENSAPLG00000012058
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047327
91999432 - 92084473
85042
ENSAPLT00000039629
91999432 - 92084473
85042
ENSAPLT00000034391
91999432 - 92084473
85042
ENSAPLT00000012560
91999432 - 92084686
85255