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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_92017831_92021014_F

Intron Information:

Intron Rank:
3
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
92017831 - 92021014
Intron Length:
3184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
TAGCTGTTTCCAG|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTCCTTAAAC
Flanking Amino Acid:
PENFRRPQTDQAVEFFIRDK
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.2
0.03
1.2
56.4
43.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74.9
0.56
1
65.4
45.2
Minor 5ss
97.5
1.6
0.6
95.7
13.5
Minor BPS
87.4
1.15
1.1
92.09
26.1

Associated Gene:

Gene:
SMAP1
Ensembl Gene ID:
ENSAPLG00000012058
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012560
91999432 - 92084686
85255
ENSAPLT00000047327
91999432 - 92084473
85042
ENSAPLT00000039629
91999432 - 92084473
85042
ENSAPLT00000034391
91999432 - 92084473
85042