About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_92021091_92039894_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
92021091 - 92039894
Intron Length:
18804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTCATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTTTATTCATTT
Flanking Amino Acid:
YDKNAVNTFNKEKEKKKEEK
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
85.3
25.4
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
84.2
0.77
0.8
81.3
35.4
Minor 5ss
37.5
-1.4
2.8
46.9
41.8
Minor BPS
50.9
0.11
1.9
76.98
40

Associated Gene:

Gene:
SMAP1
Ensembl Gene ID:
ENSAPLG00000012058
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039629
91999432 - 92084473
85042