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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_92036417_92039894_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
92036417 - 92039894
Intron Length:
3478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATATTGG
5'SS Class:
major
3'SS Sequence:
ATTCATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTTTATTCATTT
Flanking Amino Acid:
QAAAEKSKAEKEKEKKKEEK
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
64.7
41.9
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
84.2
0.77
0.8
81.3
35.4
Minor 5ss
45
-0.5
2.6
58.3
46.4
Minor BPS
50.9
0.11
1.9
76.98
40

Associated Gene:

Gene:
SMAP1
Ensembl Gene ID:
ENSAPLG00000012058
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047327
91999432 - 92084473
85042
ENSAPLT00000034391
91999432 - 92084473
85042
ENSAPLT00000012560
91999432 - 92084686
85255