Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_92039976_92061760_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

92039976 - 92061760

Intron Length:

21785

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGAATA

5'SS Class:

strong_major

3'SS Sequence:

TTCCTTTCTAAAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTGAT

U12 Branch Point Sequence:

TTACTTGTGATT

Flanking Amino Acid:

KTSKQVAVEKPQKKEDQQLE

Intron Amino Acid Position:

191

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

94.1

1.04

0.7

89.9

22.1

Major BPS

81.2

0.78

1.1

71.4

45.1

Major PPT

76.7

0.6

78.1

28.1

Minor 5ss

37.1

-1.5

48.8

46.9

Minor BPS

47.2

-0.1

1.9

67.93

37.5

Associated Gene:

Gene:

SMAP1

Ensembl Gene ID:

ENSAPLG00000012058

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039629

91999432 - 92084473

85042

ENSAPLT00000034391

91999432 - 92084473

85042

ENSAPLT00000012560

91999432 - 92084686

85255

ENSAPLT00000047327

91999432 - 92084473

85042