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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_92070055_92079742_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
92070055 - 92079742
Intron Length:
9688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
TTGACCTTTATT
Flanking Amino Acid:
LPAAAVSPAQSASTKPAAAT
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
84
27.7
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
83.9
0.76
0.8
76.5
37.3
Minor 5ss
43.2
-0.7
3.3
64.8
46.5
Minor BPS
65.6
0.57
1.7
80.72
41.2

Associated Gene:

Gene:
SMAP1
Ensembl Gene ID:
ENSAPLG00000012058
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034391
91999432 - 92084473
85042
ENSAPLT00000012560
91999432 - 92084686
85255