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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_92079912_92080516_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
92079912 - 92080516
Intron Length:
605

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATCAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTGATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TTTCTCTGAAAT
Flanking Amino Acid:
TGTMQQQNAPGMFMGSSSMP
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
80.3
34.3
Major BPS
79
0.72
1
69
38.9
Major PPT
77.5
0.62
0.9
72.4
36.8
Minor 5ss
35.2
-1.7
3.1
49.5
46.7
Minor BPS
65.5
0.56
1.5
83.8
36.1

Associated Gene:

Gene:
SMAP1
Ensembl Gene ID:
ENSAPLG00000012058
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047327
91999432 - 92084473
85042
ENSAPLT00000039629
91999432 - 92084473
85042
ENSAPLT00000034391
91999432 - 92084473
85042
ENSAPLT00000012560
91999432 - 92084686
85255