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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_92080846_92083204_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
92080846 - 92083204
Intron Length:
2359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGCT
5'SS Class:
strong_major
3'SS Sequence:
GTATGCTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
GTATGCTTCACA
Flanking Amino Acid:
NQQAQWNLSQMNQQMAGMNL
Intron Amino Acid Position:
428

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
81.2
30.6
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
71.9
0.49
1
64.8
41.2
Minor 5ss
34.7
-1.7
3.3
50.4
46
Minor BPS
53.3
0.1
2.2
68.94
43.2

Associated Gene:

Gene:
SMAP1
Ensembl Gene ID:
ENSAPLG00000012058
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012560
91999432 - 92084686
85255
ENSAPLT00000047327
91999432 - 92084473
85042
ENSAPLT00000039629
91999432 - 92084473
85042
ENSAPLT00000034391
91999432 - 92084473
85042